PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi03g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 293aa    MW: 31487.9 Da    PI: 8.2453
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi03g00100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP87.91.2e-271778977
                     ---TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP  9 adlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77
                     +dls+ak y++rhkvC +hsk+p+v+v+gl+qr       fh+l efD++krsCrrrLa+hnerrrk+ 
  Vradi03g00100.1 17 NDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQR-------FHQLPEFDQGKRSCRRRLAGHNERRRKPP 78
                     79****************************997.......7**************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114120.23777IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.105.4E-171764IPR004333Transcription factor, SBP-box
PfamPF031104.4E-181776IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.93E-261882IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGSDAAATKL SSSESLNDLS DAKAYYSRHK VCGMHSKSPT VIVAGLQQRF HQLPEFDQGK  60
RSCRRRLAGH NERRRKPPPS SLLTSRYARL SSSAFDNSGR GGNFLMELAS YPKLSLRNSL  120
PTPRSSELGP GSQTSTLSWH GNSETPADIF LQGSVGGTSF AGPGHPPGES YTGVTDSSCA  180
LSLLSSQTWG SRNTAPSLGL NNMINFNGTP MTQLTASSHG ASLHELPNTS WCFKGIDSGN  240
CSPEVVPDLG LGHISQPLNG QLHGELDLSQ QGRRHYMDLE QSREYESAHW SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-2018761984squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014496166.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A0S3RXJ00.0A0A0S3RXJ0_PHAAN; Uncharacterized protein
TrEMBLA0A0L9U7X40.0A0A0L9U7X4_PHAAN; Uncharacterized protein
STRINGGLYMA19G32800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-50squamosa promoter binding protein-like 9